Index _ | A | B | C | D | E | F | G | H | L | M | N | P | R | S | T | V | Z _ __init__() (torchff.angle.AmoebaAngle method) (torchff.angle.Angles method) (torchff.angle.CosineAngle method) (torchff.angle.HarmonicAngle method) (torchff.bond.AmoebaBond method) (torchff.bond.HarmonicBond method) (torchff.bond.MorseBond method) (torchff.coulomb.Coulomb method) (torchff.dispersion.Dispersion method) (torchff.ewald.Ewald method) (torchff.multipoles.MultipolarInteraction method) (torchff.multipoles.MultipolarRotation method) (torchff.multipoles.MultipolePacker method) (torchff.nblist.NeighborList method) (torchff.nonbonded.Nonbonded method) (torchff.pbc.PBC method) (torchff.slater.Slater method) (torchff.torsion.HarmonicTorsion method) (torchff.torsion.PeriodicTorsion method) (torchff.torsion.Torsion method) (torchff.vdw.Vdw method) A AmoebaAngle (class in torchff.angle) AmoebaBond (class in torchff.bond) Angles (class in torchff.angle) applyPBC() (in module torchff.pbc) AxisTypes (class in torchff.multipoles) B Bisector (torchff.multipoles.AxisTypes attribute) build_cluster_pairs() (in module torchff.nblist) build_neighbor_list_cell_list() (in module torchff.nblist) build_neighbor_list_cluster_pairs() (in module torchff.nblist) build_neighbor_list_nsquared() (in module torchff.nblist) C compute_amoeba_angle_energy() (in module torchff.angle) compute_amoeba_angle_energy_ref() (in module torchff.angle) compute_amoeba_bond_energy() (in module torchff.bond) compute_amoeba_bond_energy_ref() (in module torchff.bond) compute_angles() (in module torchff.angle) compute_angles_ref() (in module torchff.angle) compute_bspline_moduli_1d() (in module torchff.bsplines) compute_bspline_moduli_z() (in module torchff.bsplines) compute_cosine_angle_energy() (in module torchff.angle) compute_cosine_angle_energy_ref() (in module torchff.angle) compute_cosine_angle_forces() (in module torchff.angle) compute_coulomb_energy() (in module torchff.coulomb) compute_coulomb_energy_ref() (in module torchff.coulomb) compute_harmonic_angle_energy() (in module torchff.angle) compute_harmonic_angle_energy_ref() (in module torchff.angle) compute_harmonic_angle_forces() (in module torchff.angle) compute_harmonic_bond_energy() (in module torchff.bond) compute_harmonic_bond_energy_ref() (in module torchff.bond) compute_harmonic_bond_forces() (in module torchff.bond) compute_harmonic_torsion_energy_ref() (in module torchff.torsion) compute_lennard_jones_energy() (in module torchff.vdw) compute_lennard_jones_energy_ref() (in module torchff.vdw) compute_matrices() (torchff.multipoles.MultipolarRotation class method) compute_morse_bond_energy() (in module torchff.bond) compute_morse_bond_energy_ref() (in module torchff.bond) compute_morse_bond_forces() (in module torchff.bond) compute_nonbonded_energy_from_atom_pairs() (in module torchff.nonbonded) compute_nonbonded_energy_from_atom_pairs_ref() (in module torchff.nonbonded) compute_nonbonded_forces_from_atom_pairs() (in module torchff.nonbonded) compute_periodic_torsion_energy() (in module torchff.torsion) compute_periodic_torsion_energy_ref() (in module torchff.torsion) compute_periodic_torsion_forces() (in module torchff.torsion) compute_slater_energy() (in module torchff.slater) compute_slater_energy_ref() (in module torchff.slater) compute_tang_tonnies_dispersion_energy() (in module torchff.dispersion) compute_tang_tonnies_dispersion_energy_ref() (in module torchff.dispersion) compute_torsion() (in module torchff.torsion) compute_torsion_ref() (in module torchff.torsion) compute_vdw_14_7_energy() (in module torchff.vdw) compute_vdw_14_7_energy_ref() (in module torchff.vdw) computeCartesianQuadrupoles() (in module torchff.multipoles) computeDampFactorsErfc() (in module torchff.multipoles) computeInteractionTensor() (in module torchff.multipoles) computeSphericalQuadrupoles() (in module torchff.multipoles) convert_pairs_coo_to_csr() (torchff.nblist.NeighborList class method) convertMultipolesToPolytensor() (in module torchff.multipoles) CosineAngle (class in torchff.angle) Coulomb (class in torchff.coulomb) D decode_cluster_pairs() (in module torchff.nblist) Dispersion (class in torchff.dispersion) E Ewald (class in torchff.ewald) ewald_long_range() (in module torchff.ewald) ewald_long_range_with_fields() (in module torchff.ewald) expand_type_pairs() (torchff.dispersion.Dispersion method) (torchff.slater.Slater method) (torchff.vdw.Vdw method) F forward() (torchff.angle.AmoebaAngle method) (torchff.angle.Angles method) (torchff.angle.CosineAngle method) (torchff.angle.HarmonicAngle method) (torchff.bond.AmoebaBond method) (torchff.bond.HarmonicBond method) (torchff.bond.MorseBond method) (torchff.coulomb.Coulomb method) (torchff.dispersion.Dispersion method) (torchff.ewald.Ewald method) (torchff.multipoles.MultipolarInteraction method) (torchff.multipoles.MultipolarRotation method) (torchff.multipoles.MultipolePacker method) (torchff.nblist.NeighborList method) (torchff.nonbonded.Nonbonded method) (torchff.pbc.PBC method) (torchff.slater.Slater method) (torchff.torsion.HarmonicTorsion method) (torchff.torsion.PeriodicTorsion method) (torchff.torsion.Torsion method) (torchff.vdw.Vdw method) G get_bspline_coeff_order6() (in module torchff.bsplines) get_bspline_modulus() (in module torchff.bsplines) H HarmonicAngle (class in torchff.angle) HarmonicBond (class in torchff.bond) HarmonicTorsion (class in torchff.torsion) L LastAxisTypeIndex (torchff.multipoles.AxisTypes attribute) M module torchff.angle torchff.bond torchff.bsplines torchff.coulomb torchff.dispersion torchff.ewald torchff.multipoles torchff.nblist torchff.nonbonded torchff.pbc torchff.slater torchff.torsion torchff.vdw MorseBond (class in torchff.bond) MultipolarInteraction (class in torchff.multipoles) MultipolarRotation (class in torchff.multipoles) MultipolePacker (class in torchff.multipoles) N NeighborList (class in torchff.nblist) NoAxisType (torchff.multipoles.AxisTypes attribute) Nonbonded (class in torchff.nonbonded) normVec() (in module torchff.multipoles) P PBC (class in torchff.pbc) PeriodicTorsion (class in torchff.torsion) R rotate_dipoles() (torchff.multipoles.MultipolarRotation class method) rotate_quadrupoles() (torchff.multipoles.MultipolarRotation class method) rotateDipoles() (in module torchff.multipoles) rotateMultipoles() (in module torchff.multipoles) rotateQuadrupoles() (in module torchff.multipoles) S scaleMultipoles() (in module torchff.multipoles) Slater (class in torchff.slater) T ThreeFold (torchff.multipoles.AxisTypes attribute) to() (torchff.nblist.NeighborList method) torchff.angle module torchff.bond module torchff.bsplines module torchff.coulomb module torchff.dispersion module torchff.ewald module torchff.multipoles module torchff.nblist module torchff.nonbonded module torchff.pbc module torchff.slater module torchff.torsion module torchff.vdw module Torsion (class in torchff.torsion) V Vdw (class in torchff.vdw) Z ZBisect (torchff.multipoles.AxisTypes attribute) ZOnly (torchff.multipoles.AxisTypes attribute) ZThenX (torchff.multipoles.AxisTypes attribute)